![]() Other commands like ssh userhost date or ssh userhost ls -l woks fine. returning: bash: docker: command not found. Everything is fine when I log in using SSH, but this will fail: ssh userhost docker info. In the installation process I installed Docker (as a snap). Users/posnerlab/opt/anaconda3/bin:/Users/posnerlab/opt/anaconda3/condabin:/opt/local/bin:/opt/local/sbin:/Applications/freesurfer6/freesurfer/bin:/Applications/freesurfer6/freesurfer/fsfast/bin:/Applications/freesurfer6/freesurfer/tktools:/usr/local/fsl/bin:/Applications/freesurfer6/freesurfer/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Users/posnerlab/.local/lib/python3.7/site-packages/python3.7:/Users/posnerlab/.local/bin/fmriprep-docker:/opt/X11/bin:/Users/posnerlab/abin:/Applications/MRIcroGL:/Applications/MATLAB_R2016a.app/bin:/Applications/MRIcron:/Users/posnerlab/. Im accessing Ubuntu 19.10 running as a virtual machine. Users/posnerlab/.local/bin/fmriprep-docker Thanks to everyone for this thread! I am also very new to fMRI prep, and I’ve been getting a similar error.įmriprep-docker /Volumes/Pegasus_tsussman/data/GESTE/fMRI_data /Volumes/Pegasus_tsussman/data/GESTE/GESTE_fMRI_Prep_Output participant -participant-label GESTE_1005_77599664329_noExposureData -fs-license-file /Applications/freesurfer6/freesurfer/license.txtįmriprep: Could not find docker command… Is it installed? I emailed our IT guy, as it make be about permissions on the server but I also wanted to check in here to see if neurostars had an idea? ![]() Got permission denied while trying to connect to the Docker daemon socket at unix:///var/run/docker.sock: Get dial unix /var/run/docker.sock: connect: permission deniedĭocker: Got permission denied while trying to connect to the Docker daemon socket at unix:///var/run/docker.sock: Post dial unix /var/run/docker.sock: connect: permission denied.Ĭould not detect memory capacity of Docker container. I was able to add the path to my path environment variable, which solved the “command cannot be found” issue, but instead I got the following fmriprep-docker /deep/heller/work/Healthyu /deep/heller/work/Healthyu/sub-5002 participant -participant-label 5002 -fs-license-file /usr/local/freesurfer/6.0.0/license.txt -ignore slicetiming ![]() Hi there - I was having similar issues as and we are actually operating from the same server at the same university. ![]()
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